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Payroll clerk salary in Puerto Rico

The median payroll clerk in Puerto Rico earns $34,200 a year, or $16.44 an hour, in the Bureau of Labor Statistics’ May 2025 survey. That is 41% below the national median of $58,260, and 54th of the 54 states and territories BLS publishes.

The middle half of Puerto Rico’s 1,040 payroll clerks earn between $27,900 and $41,320. The highest paying metro area in the state is San Juan-Bayamon-Caguas, PR, at $34,870.

Liaison does the routine half of a payroll clerk’s job for 16% of what one costs in Puerto Rico. See how.

Payroll clerk salary by city in Puerto Rico

Every metro area in Puerto Rico where BLS publishes a median for payroll clerks, highest first. A metro that crosses a state line appears under each of its states.

Metro areaMedian annualMedian hourlyMiddle half earnsEmployed
San Juan-Bayamon-Caguas, PR$34,870$16.76$28,470 to $41,390830
Mayaguez, PR$33,170$15.95$26,900 to $39,02060
Aguadilla, PR$30,840$14.83$26,380 to $40,20040
Ponce, PR$29,640$14.25$27,010 to $36,71060

What a payroll clerk costs an employer in Puerto Rico

Wages are the start. At employers with fewer than 50 workers, benefits add 35% on top (BLS Employer Costs for Employee Compensation), so a payroll clerk at the Puerto Rico median costs about $46,200 a year. The employer’s view for every state and metro is on what a payroll clerk costs, and the routine part of the job is what Liaison does inside the tools a business already runs.

Liaison Professional · $629 a month

The routine half of a payroll clerk’s job, for 16% of what one costs in Puerto Rico.

  • Collects the hours and the approvals before the run and flags what does not add up.
  • Cross-checks the payroll totals against the books at month end.
  • Tells you on Monday whether Friday’s payroll is covered, from the bank, the books and the payouts on their way.

Professional is $629 a month, $7,548 a year, against about $46,200 a year for a payroll clerk at the Puerto Rico median once benefits are added. On Professional we connect your tools, bring your data in and set up the first rules with you. Anything that moves money waits for your yes.

“Cut our month-end close from 4 days to 4 hours.” Marcus C., owner

$629 a month, or $500 a month on a 12-month term. Prefer to start on your own? Starter is $149 a month, self-serve, with a free trial first: 7 days, no card. More: AI bookkeeper.

Liaison, on its own at 8:02 AM: Morning, Sam. Payroll runs Friday, $57,300. You are covered. $81,200 available Friday from the QuickBooks checking balance, Friday’s Stripe payout and the Gusto payroll run.

Questions

How much does a payroll clerk make in Puerto Rico?

The median payroll clerk in Puerto Rico earned $34,200 a year, or $16.44 an hour, in May 2025. The middle half earned between $27,900 and $41,320. Nationally the median is $58,260, so Puerto Rico pays 41% less than the country as a whole.

Which cities in Puerto Rico pay payroll clerks the most?

San Juan-Bayamon-Caguas, PR ($34,870), Mayaguez, PR ($33,170) and Aguadilla, PR ($30,840).

What does a payroll clerk cost an employer in Puerto Rico?

Benefits at employers with fewer than 50 workers add 35% on top of wages, so a payroll clerk at the Puerto Rico median costs about $46,200 a year. The employer’s view is at useliaison.com/back-office-costs/payroll-clerk.

See it on your own business.

Thirty minutes with us, on your own tools. Bring the thing that eats your evenings and watch it get handled from your own inbox, calendar and books.

Professional is $629 a month and we set it up with you. Starter is $149 a month, self-serve, with the free trial first: 7 days, no card. Every plan is on the pricing page.